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Therefore, by applying unit step function to the exponential models and partitioning the parameters space into linear and exponential regions, we come up with an accurate model.
We used PartitionFinder [ 43] to identify nucleotide substitution models and partitioning strategies for the dataset.
Additional file 3: Best-fit models and partitioning scheme obtanied with PartitionFinder.
The current approaches to reconstructing phylogenies emphasise the selection of proper substitution models and partitioning methods [ 49, 51, 74].
We used PartitionFinder [ 20] to simultaneously infer both the best-fitting nucleotide substitution models and partitioning scheme.
Each data set was subject to five different models and partitioning schemes of non-synonymous and synonymous changes.
Similar(49)
Modeling and partitioning ecosystem evapotranspiration (ET) are important in predicting the responses of ecosystem water cycles to global climate change and land use.
The SCA problem is formulated as a non-linear integer programming model and partitioned into two sequential linear sub-models: one finds all primary backup paths, and the other finds all secondary backup paths.
Multilevel models use measures of clustering and variance in informative ways and can simultaneously model and partition the observed variation across individual and area-levels [ 28, 30, 31].
Models and partitions used are summarized in Table 5. Model parameters were unlinked between data sets.
Loci were allowed unlinked substitution models, clock models and partition trees.
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