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In the theoretical modelling, the orientation of each domain is defined by its local coordinate relative to a fixed global coordinate.
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We also model the orientation and the distance between the two persons during the interaction.
We then use a combination of experimentally determined measurements and symmetry constraints to model the orientation in which homodimers of Vps75 associate to form homotetramers using the XPLOR-NIH platform.
In order to setup this simulation in URDME, a Matlab function for the velocity field modeling the average orientation of the fibers at any point in the domain needs to be provided.
Recently, we presented a method to model the molecular orientation of a similar rod-like OSC by force-field calculations, where the only experimental input was the unit cell dimensions deduced from GIXRD.
Once they are "modeled," the higher orientations "new-model" the lower.
The approach consists of modeling the motion orientations over a certain number of frames in order to estimate a direction model.
This observation provides the basics for using the SHMM to specifically model the head head orientations for the prediction of common transcription factor target genes.
Next, we investigate whether the putative ABI3 target genes that have only been predicted by the SHMM at the level of the top 200 candidates are the consequence of specifically modeling the head head orientations.
In this model the orientation of the orthotropy directions are characterized in terms of the Euler angles, which replace the elastic rotations.
Despite slight differences between the calculated and observed maximum principal compressive stress, the modeling results of the Late Mesozoic stress fields indicate that the orientation of the maximum principal compressive stress in the Ordos Basin is WNW, whereas in the Cenozoic model, the orientation is NE.
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