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In modelling structures of PCN, this study uses the Exponential Random Graph (ERG) model which is a probabilistic model and has been utilised extensively in the social science literature to study the dynamics of network formation from underlying locally prominent micro structures such as 2-star, 3-star, triangle and so on [ 15].
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This analysis was carried out by molecular docking, using newly modeled structures of the two ribosomal proteins.
Figure 2 Model structures of the related systems.
All possible model structures of small proteins are available below a certain energy threshold.
The model structures of ChTx-KCa3.1 and OSK1-KCa3.1 complexes are then constructed using MD simulations biased with distance restraints.
The structures comprised reconstructed tomographic data obtained by means of MRI as well as model structures of various complexity.
The model structures of oligomers are generated using "building blocks" determined upon satisfaction of these restraints.
Atomic model structures of different oligomeric species are generated from crystal symmetry data.
The overall model structures of MEC-4 and UNC-8 resemble an upright forearm and a clenched hand (Figure 1).
Interestingly we found that our model structures of γ became compact for higher oligomeric forms with γ4 likely forming a semi-closed ring-like structure.
Model structures of APL1, APL2 and APL3 were identical in these features.
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