Sentence examples for modelling formalisms such from inspiring English sources

Subsequently, we extracted rules by manual curation from literatures, pathway databases and converting different modelling formalisms such as Petri-net and ODE.

Such models are usually constructed using abstract modelling formalisms such as Systems Biology Markup Language (SBML; Hucka et al., 2003) and CellML (Cuellar et al., 2003).

Future enhancements will include the addition of new data sources and ontologies, annotation of elements other than species and reactions and support for other modelling formalisms such as CellML.

The types of modeling formalism depend on such characteristics [11].

modeling formalisms, languages, and tools.

That is why railway safety systems have been modeled using different formalisms, such as Petri nets, UML and others [1, 2, 3, 4, 5, 6], in order to facilitate the expression of the know-how of industrial experts who may not be familiar with mathematical formalisms.

An LQN model of an application can be built automatically from software engineering models expressed using formalisms such as UML or Palladio Component Models (PCM) [57].

The kinetic logic modeling formalism of Rene Thomas is one of the established methods to perform qualitative analysis of such systems (Thomas and Thieffry 1995; Gagneur and Casari 2005; De Jong et al. 2004) without any prior knowledge of kinetic parameters.

(ii) What modeling formalism yields the most interpretable results for each biological system of interest?

Thus, the structural interpretation of models specified in formalisms such as SBML may vary according to the source of the original model.

That is, the well-founded model posits as unknown atoms which are deemed true or false in other formalisms such as stable models.