Sentence examples for modelled structures were from inspiring English sources

Models with the highest C-scores and conformation similarities to other modelled structures were used for further analysis.

Binding sites in the modelled structures were analysed for the occurrence of nearby insertions/deletions.

The energies of the modelled structures were initially minimized in vacuum using GROMACS with an AMBER force field (http://ambermd.org/) on a CPU cluster of the National Grid Service NGSS).

The solvent accessibilities of the amino acid residues in a 3D modelled structure were calculated using a modification of the Shrake and Rupley method, with a water molecule represented by a 1.4 Å radius sphere.

The stereochemical quality of the modelled structure was analysed using procheck [36].

The modelled structure was imported and corrections were carried out by Protein Preparation wizard of Schrodinger, where hydrogens were added automatically and refinement of the structure was done.

As expected, the modelled structure is roughly similar than the template, with the six helices typical of the OBP family in equivalent positions and with a similar predicted folding.

The C and mC docking on to A3A and the modelled A3BCD2 structures was performed using the programme Glide [ 54].

To simulate their nonlinear behaviour, the structures were modelled adopting recently developed deteriorating hysteresis models.

But because the dimer and trimer structures were modelled, native oligomeric structure were needed to furtherly verify the conclusion.

Protein structures were modelled for OsCAX1a and OsMHX1.