Sentence examples for modelled structure with from inspiring English sources
The trajectories were not greatly different from the modelled structure, with only minor movements of the Cα of the protein observed.
Numerical determination and variation of tortuosity by closing structure windows provided a possibility to match the pressure drop calculated in modelled structures with experimental literature data.
Based on the modelled structure in combination with an alignment of other acariform 12S-rRNAs, the greatest sequence conservation was found in the loop region of stem-loops 21 and 27 and the region between stem-loops 48 and 50.
Sequence alignment and structural superimposition of a modelled structure of DUF1572 (UniProt: Q5L211_GEOKA) with YfiT from Bacillus subtilis (PDB ID: 1RXQ [ 35]) as template, reveals the conservation of histidine residues that can potentially coordinate a metal-ion (Fig. 5a).
As expected, the modelled structure is roughly similar than the template, with the six helices typical of the OBP family in equivalent positions and with a similar predicted folding.
The modelled structure of the Bgl1 predicts the 8 barrel type structure with deep and narrow active site, whereas, Bgl3 shows the 8 barrel and 6 sandwich structure with shallow and open active site.
In this paper, we explore the interaction between Nse3 and Nse4 and we identify a conserved hydrophobic pocket on the modelled structure of yeast Nse3 which mediates the interaction with Nse4.
The modelled structure of DdRACK1 features the seven β-propeller architecture with each propeller blade arranged in sequential order and made up of four-stranded antiparallel β-sheets.
When the modelled structure of mortalin was subjected to in silico docking with Bcl-2 and Bcl-xL proteins, based on the experimental data and predicted functional residues, mortalin was able to form complexes with Bcl-2 and Bcl-xL.
The solvent accessibilities of the amino acid residues in a 3D modelled structure were calculated using a modification of the Shrake and Rupley method, with a water molecule represented by a 1.4 Å radius sphere.
The stereochemical quality of the modelled structure was analysed using procheck [36].
