Sentence examples for modelled structure and from inspiring English sources

However, these results are specific to the modelled structure and the input parameter set.

The stability of the modelled structures and their complexes was always evaluated and controlled by molecular dynamics.

The modelled structures and sequences can be downloaded in PDB and FASTA formats, respectively.

These are modelled structures and so should be treated with some caution.

The modelled structure was imported and corrections were carried out by Protein Preparation wizard of Schrodinger, where hydrogens were added automatically and refinement of the structure was done.

To begin with, protein structure prediction requires understanding of the differences that exist between a well-folded protein structure and a modelled structure.

These are shown mapped on a modelled structure in Figure  1 (and on a multiple sequence alignment in Additional file 1; tabulated in Additional file 2).

Sequence alignment and structural superimposition of a modelled structure of DUF1572 (UniProt: Q5L211_GEOKA) with YfiT from Bacillus subtilis (PDB ID: 1RXQ [ 35]) as template, reveals the conservation of histidine residues that can potentially coordinate a metal-ion (Fig.  5a).

The energy minimized crystal structure of Bos taurus b20S (PDB: 1IRU) and the modelled structure of h20S were used to carry out molecular dockings.

A rational approach was used in engineering of scFv 4D5-8 fusion with mRFP1 based on the x-ray crystal structure of 4D5-8 Fab (PDB 1N8Z) [ 46] and the modelled structure of mRFP1 based on the DsRed dimer (PDB 1G7K[ 1G7K[

Can these been identified and mapped to the modelled structure?