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A malate-bound structure of AtDAP-AT allowed LL-DAP and L-glutamate to be modelled into the active site.
h, The side chain of 6 (grey sticks) was modelled into the active site of PylRS using a co-crystal structure of PylRS and adenylated pyrrolysine (PDB accession number 2ZIM31).
Following these considerations the model structure imposed by the distributed parameter system dynamics is modelled into the estimation algorithms.
The NADP+ moiety was modelled into the density using PHENIX ligandfit [56], [57].
During the initial refinement of the HI-6sarinnonaged-mAChE complex, the oxime group was modelled into the Phe295 site.
In a previously determined structure of HI-6 in complex with the non-phosphonylated mAChE (HI-6mAChE), the oxime oxygen atom was modelled into the same density feature [24].
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Further considerations address integrating systems modelling into the CAD/BIM-based design process.
The corresponding tag (x,y,z) locations were then modeled into the BIM model.
There is also support for Augmented Reality with owners able to integrate third party 3D modelling into the camera view.
Thirdly, a cognitive radio mechanism is also devised and modeled into the problem formulation.
All of the protein could be modeled into the electron density map except for one loop corresponding to residues 68 76.
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