Here we use bioinformatics methods to derive accurate alignments of channelrhodopsin sequences, assess the sequence conservation patterns and find conserved motifs in channelrhodopsins, and use homology modeling to construct three-dimensional structural models of channelrhodopsins.
In our homology modeling to construct the rat leptin, the AB loop was included.
To improve our understanding of the TLR10 receptor-ligand interaction, we used homology modeling to construct a three dimensional (3D) structure of hTLR10 and refined the model through molecular dynamics (MD) simulations.
Here, we use techniques from flux balance analysis and nonlinear dynamic modeling to construct a mathematical model of monolignol biosynthesis in Populus xylem.
We previously applied computational modeling to construct an integrated amino acid transport model for several amino acids across the human placental syncytiotrophoblast as a model epithelium (7).
The lattice stabilities of binary phases and demixing energies of ternary phases calculated by the ab initio method are then used in thermodynamic modeling to construct the Gibbs free energy diagram of the immiscible quasi-binary ZrN AlN system at different temperatures.
