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Primarily due to the massive increase in modeling time scales it affords, the MORFAC approach is now standard in state-of-the-art commercially available coastal morphodynamic modeling suites.
The second approach used models that were generated using the Phyre2 and I-TASSER online modeling suites.
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This turbulence model is part of a unified annular flow modeling suite that includes methods to predict the entrained liquid fraction and the axial frictional pressure gradient.
In this paper we extended the Dutch National Transport Model NVMM) [22] implemented in the OmniTRANS transport modelling suite to model the mobility and accessibility effects of changes in the (transport) infrastructure.
Here we report the development, incorporation in to the Rosetta macromolecular modeling suite, and validation of rotamer libraries for β3-amino acids.
Fleishman SJ, Leaver-Fay A, Corn JE, Strauch EM, Khare SD, Koga N, Ashworth J, Murphy P, Richter F, Lemmon G, Meiler J, Baker D. (2011) RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite.
The Reaction Modeling Suite (RMS; U.S. patent pending) is a set of tools based on artificial intelligence and optimization techniques that enables the expert to initiate the kinetic modeling sequence in a simple reaction chemistry language.
For demonstration purposes, the approach was applied to results from a transport and emission modeling suite, which was designed to quantify the present-day and possible future transport activities in Germany and the resulting emissions.
OO-IDLAMS is a prototype conservation modeling suite that provides military environmental managers and decision-makers with a strategic, integrated and adaptive approach to natural resources planning and ecosystem management.
It has been designed and developed to be integrated with RosettaLigand which is part of the macromolecular modeling suite Rosetta.
Amino acid side chains were substituted in by Maestro (Schrodinger, Molecular Modeling Suite, NY).
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