Sentence examples for modeling packages such from inspiring English sources

BCL Conf mimics the 'rotamer' libraries created to capture amino acid side chain conformations seen in protein structures within the PDB [20] which, ultimately, will ease its integration with protein modeling packages such as Rosetta [ 21].

There is the availability of various deterministic lumped modeling packages such as the US Army Corps of Engineers HEC-RAS and HEC-HMS, the US Soil and Conservation Service's TR-20 and TR-40, USDA's SWAT, DoT WSPRO, EPA's WASP and BASINS and USGS's DRM3 and PRMS, etc. (Singh and Frevert 2002a, b).

Molecular modeling packages such as AMBER (http://ambermd.org), CHARMM (www.charmm.org), or GROMOS (www.igc.ethz.ch/GROMOS/index) make it possible for users to set up sophisticated and complex models of biological molecules.

Neural modeling packages such as NEURON (www.neuron.yale.edu/neuron), SNNAP (http://snnap.uth.tmc.edu), or GENESIS (www.scholarpedia.org/article/GENESIS) make it possible for users to set up complex models of individual neurons, small neural circuits, or large biologically based neural networks.

In addition, some modeling packages such as NONMEM can produce different results depending on the compiler (e.g., Fortran vendor or version) and compiler options used.

Starting around 2000, DTRA funded fire prediction modeling to facilitate the incorporation of models within a modern computer modeling package such as HPAC [ 8] and we have used the underlying fire start theory from this work in our calculations.

Furthermore, modelling packages, such as Mplus [ 12] have sophisticated routines that permit the inclusion of individuals who were not assessed at all time points.

Adjusting off-the-shelf modelling packages, such as SWAT, for our purposes (see for example, Martinez de Anguita et al. [2011] and Quintero et al. [2009]), was deemed inappropriate by local hydrologists.

Interactive modeling packages of 'what-if analysis' type, such as FluAid (http://www.cdc.gov/flu/tools/fluaid/) and FluSurge (http://www.cdc.gov/flu/tools/flusurge/) are presently used to inform regional and local policies concerning hospital surge capacity [43] and loss of medical work time [44] when planning pandemic responses.

Such a correction is not necessary if the variance components for all chromosomes are estimated simultaneously as applied in this study; this is a further advantage besides its straightforward implementation using standard mixed model software packages such as ASReml.

As a building's 3D model is gradually developed, model generation software packages, such as Autodesk Revit, automatically create log files that record design activities.