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To minimize possible clashes between atoms of the crystallographic structure and the added missing peptide sequences, prior to homology modeling a short energy minimization step took place while keeping the crystallographic structures' heavy atoms spatially restrained.
Given that microarray data only measure a small component of the interacting variables in a genetic regulatory network[ 9] and that some portions of the nonlinear relationships between TF-targets are difficult to simulate and predict [ 10, 11], identifying via TF-target modeling a short list of crucial TFs controlling biological processes in either mammals and plants is inefficient.
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Therefore, one may model a short timescale transient phenomenon involving MHD wave propagation.
A factorial experimental design based on temperature, feed rate and addition of "working fluid" (WF; fatty acid ethyl esters) was used to model a short-path distillation process applied for removal of persistent organic pollutants (POPs) in fish oil.
As shown in Figure 2, we compare a long-distance model (model 1), a short-distance model (model 2), and a zero-distance model (model 3) in terms of the distance between the SSE area and the earthquake area.
Each sequence was modelled as a short event of 1.2 seconds duration and was convolved with a haemodynamic response function.
However, due to the lack of data assimilation in the ocean model, a short spin-up (3 weeks) was used to avoid too much drift of the ocean model from observed conditions.
In these connection models, a short stub beam is used to connect I-beams to box-columns by bolted end plate connection.
In some experiments, normal slip is maintained for ~ 3 Ma, whereas in other models, a short phase of normal faulting is followed by slow reverse slip.
In our model, a short exposure of Müller-derived rMC-1 cells to 400 µM H2O2 induces necrosis rather than apoptosis, as shown by Annexin-V/PI staining and flow cytometry and DNA fragmentation analyses.
Experimental data were well fitted with a 2-component model, a short lifetime component (0.7 nsec for both LOPD and GAA-KO fibers) and a longer lifetime component (2.9 nsecs for LOPD and 3.2 nsecs for GAA-KO).
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