Sentence examples for modeled loops were from inspiring English sources

The modeled loops were optimized and the side-chains fine-tuned by combining steepest descent and simulated annealing strategies for minimization.

The new model of the full-length protein (including the modeled loops) was used for purposes of comparative analysis.

The modeled loops are ranked accordingly.

The best loops are seamless.

The classic loops are fine.

The modeled structure of the loop is obtained via MODELLER with default parameters (Sali and Blundell, 1993) using the loop with the closest predicted RMSD to the input loop as template.

However, in a more realistic setting, the native structure of the remaining part of the protein is usually unknown, and the loop is built on the basis of a modeled structure.

In the modeled hIL-3:receptor complex, the corresponding region of IL-3, the AA' loop, is similarly positioned to form an analogous interaction interface in the dodecamer (Figure 3A and 3C).

In order to investigate the motion of the two loops, the modeled structure was simulated by the explicit water MD and a 20 ns MD simulation was performed.

Consistent with this mechanism, sequence-based predictions of aggregation propensity produced by Zyggregator are also correlated with IB formation, though not with modeled loop stability.

Computer modeled scenarios were also predicting play calling and projecting the outcomes of games.