Sentence examples for model with invariable from inspiring English sources
In addition, a Bayesian tree was calculated with MrBayes 3.1 [45] using a GTR model with invariable sites and rate heterogeneity.
For the concatenated alignments of all individual genes or selected genes in this study, the maximum likelihood topology was obtained through RAxML [58] web servers using the JTT model with invariable sites.
The best-fit ML model was TIM + I + G (transition model with invariable sites plus gamma distribution).
The best-fit ML model was GTR + I + G (General time-reversible model with invariable site plus gamma distribution).
The best-fit substitution model, determined through hierarchical likelihood ratio tests, was the GTR model, with invariable sites and a gamma shape parameter estimated from the data.
The program MrBayes [ 22] was used to reconstruct the trees, assuming a JC model with invariable sites and a covarion process (JC+I+covarion).
The ML tree was generated using the nearest neighbour interchange (NNI) tree search algorithm and 100 bootstrap replicates implemented in MultiPhyl [ 34] under the Akaike Information Criterion AICC) statistic, the selected substitution model was JTT with invariable sites and a discrete gamma model of rate heterogeneity.
The AIC2 and BIC test indicated the MtMam model [ 49] with invariable sites parameter (MtMam+I) as the best model phylogenetic reconstructions based on MT-CO1 and MT-CO2 protein data, while MtMam with Gamma shape parameter (MtMam+G) was indicated for MT-CYB, and the Jones-Taylor-Thornton (JTT) [ 50] model for SRY.
The Kimura K80 model with proportion of invariable sites was selected for OPA1-3 (base frequencies = equal; tratio = 1.47; proportion of variable sites = 0).
The tree with the highest AICc value was using the JTT model with estimation of invariable sites and estimation of gamma distribution.
Maximum likelihood analyses of the intron and exon data sets were performed with Garli 0.951 [ 55] under the General Time Reversible model with parameters for invariable sites and gamma-distributed rate heterogeneity (GTR+I+Γ4; four rate categories).
