Sentence examples for model tests implemented from inspiring English sources
We first performed site model tests implemented in PAML to search for evidence of positive selection.
Substitution model (Kimura two-parameter, K2 + G) was derived from model test implemented in this software.
The two-group comparison—each of which consists of n = 4 independent samples was performed using the gene-wise negative binomial generalized linear model with quasi-likelihood tests, implemented in EdgeR.
In comparison, the hierarchical island model-based test implemented in ARLEQUIN (Excoffier et al. 2009) using all samples identified selection in 89 loci at α = 0.01 (Fig. 2B).
The Kimura two-parameter model with invariant sites was chosen for both the tree reconstruction and distance calculations based on the likelihood ratio test of log likelihood values provided using the nucleotide model test also implemented in Mega.
Site-model tests were implemented using codeml to compare model M8a (beto+ω=1) to M8 (beta+ω) [ 41, 42].
A 1 30 scaled braceless semi-submersible model test which implements the ReaTHM® testing approach was done by SINTEF Ocean, formerly MARINTEK, in its ocean basin.
Differential expression analysis was performed using linear models (limma) t-test, implemented in the POMELO II tool from Asterias package (http://asterias.bioinfo.cnio.es) (Bignell et al, 2000).
The latter model was selected based on an amino-acid substitution-model test as implemented ProtTest 3 (Darriba et al., 2011).
The observed allele pattern (heterozygous, homozygous P1, homozygous P2) frequencies across the progeny strains were then compared to this model using the multinomial exact test implemented in R. Bonferroni correction for the number of markers tested was applied to an initial significance threshold of P = 0.05, setting a final significance threshold.
For the ML methods, the optimal model of sequence evolution was determined to be the Tamura-Nei + I + gamma model by the hierarchical likelihood-ratio test implemented in MODELTEST 3.7 [ 54].
