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A significant interaction between breed and the remaining four factors was identified in the multinomial log-linear model; subsequent analyses were performed separately for each breed (cf. Figure 1a).
Because time and its interaction with treatment were significant factors in the model, subsequent analyses separated the data by sampling times to examine the effects of treatment at each time point.
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Variation among individual wasps, which were never re-used, did not contribute significantly to the model, and this variable was removed from the model for subsequent analyses.
Model M1 depicted in Fig. 1 was the baseline model for subsequent analyses.
Bayes factor comparisons strongly preferred the uncorrelated gamma relaxed clock model over the auto-correlated and strict clock models (2* ln(Bayes factor) equals 14.3 and 132.5, respectively [ 47]), and we used this model for subsequent analyses.
Along with the formal HTL model and subsequent analyses (both with and without refinement), the work presents a compiler that accepts an HTL program.
This led us to exclude the model from subsequent analyses.
This model and subsequent analyses [47], [48], however, do not explain the acquisition of α1-box genes in ascomycotan mating types.
Therefore, we used the outputs from the constant-size coalescent population model for subsequent analyses.
These four variables were therefore treated as time-dependent variables in an extended Cox model in subsequent analyses.
Tests for sex interactions were performed and where there was evidence of this in the unadjusted model; all subsequent analyses were carried out separately for men and women.
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