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Additional file 2: The PatchDock' model structure after energy minimization.

Additional file 4: The ClusPro-predicted model structure after energy minimization.

Additional file 5: The PatchDock-predicted model structure after energy minimization.

Additional file 6: The first ZDOCK-predicted model structure after energy minimization.

Additional file 7: The second ZDOCK-predicted model structure after energy minimization.

Such criteria can be based on the properties of the model structure: Del ContetZerial et al. [ 15] perform e.g. bifurcation and phase plane analysis on each model structure, after which they dismiss the structures that lack certainproperties.

After model structure was established with model and unit checks made, it was further validated using values got for WAPP in another independent study [14] as presented in Table 7.

After model structure and initial parameter estimates were in place, the parameters were optimized, individually or in groups, using the R package "minqa".

By fixing the residual variance for single-measures traits (AFR and L) to zero, this model structure allows the residual (after correcting for fixed effects) variance for these traits to be represented by the individual-level variance, allowing estimation of the phenotypic covariance between AFR, L, and the individual-level repeatability of ABS (Morrissey et al. 2012a).

Abbreviations: RSV, respiratory syncytial virus; MA-RSV, medicattendedended RSV infection; RSV-H, RSV infection resulting in hospitalization Fig. 2 Markov model structure for children with CHD after the first year of the model.

At the test run, after the model structure was developed, two parameters were found to have considerable influence on the model behavior, namely, time to adjust capacity and expectation formation time.