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Before evaluating simulated data from the network model, simulations generated from the distribution itself were tested.
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One of the degree value frequency histograms for ER model and BA model generated for simulation is shown in Fig. 9.
The simulations generated from the models are also considered " in numero" experiments to address questions yet to be answered empirically.
Students can observe their model behaviors as simulations in the E-World, i.e., the "Run" interface or they can compare the simulations generated by their models against an "expert" simulation in the V-World, i.e., the "Compare" interface.
The N δ1 atoms from the catalytic histidine in the C. d. terrificus sPLA2 crystallographic model were protonated, and the simulations generated approximately 1000 docking solutions to provide a representative population.
The N δ1 atoms from the catalytic histidine of the C. d. terrificus sPLA2 crystallographic model were protonated, and the simulations generated approximately 1000 docking solutions to provide a representative population.
A computer simulation of the model generated double-peaked relapse histograms reasonably similar to clinical data [ 18].
Simulations with the model generated testable hypothesis on the response of the network upon perturbation, which were experimentally evaluated to identify the pathways that function in our particular liver cell system.
In addition, compared with the simulations of the detailed model in Figure 6A and 6C, the two-variable model generates simulations with more fluctuations in Figure 6B and 6D.
The model generated after the MD simulation was checked using several GROMACS structural analyses, as well as the analysis of Ramachandran plot generated with Rampage [ 37].
Calculations of nestedness were tested against a null model generated by Monte-Carlo simulations (1000 permutations) within program ANINHADO [63].
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