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The chain heating parameter was set at 0.3 and apart from the model settings, the default settings were retained.
More specifically, with the same computational environment and model settings, the computational time required by DHSVM-MacCormack can be reduced to several dozen minutes for a simulation period of three months (in contrast with one day and a half by the original DHSVM model) without noticeable sacrifice of the accuracy.
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The model settings of the GW simulation were identical to those of the PD simulation, and the experimental design is described in Satoh et al. (2015).
The model settings were the same as those described in the "Asian summer monsoon" section.
Our results suggested a fine grid search for the transformation parameter should be used regardless the inclusion of factors with potential structural effects and regardless of whether the analysis uses the linear or mixed model settings, because the agreement on test for the structural effects occurs only if both transformations are optimized.
Bayesian phylogenetic analysis was performed using MrBayes with the same model settings as the ML analyses.
We start the evaluation of the model settings by addressing the most prominent question of how many AS signals are we able to identify in the data.
The work presented here, however, use stochastic and discrete model settings to investigate the various aspects of opinion formation as discussed in subsequent sections of this exposition.
Kodama et al. (2015) documented the model settings and experimental design of the PD simulation.
In the tab Model Settings you can zoom into the models in this view by clicking the icon Zoom Tray, and selecting Zoom Selected Object.
Lineage-specific rates of substitution were then calculated for each of the four alignments with BASEML, with the same model settings as previously described, and a set species tree topology [ 90- 92].
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