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Ultramafic outcrops have long-provided model settings for studies on the ecology of plant species and plant communities.
The analysis of the concatenated dataset was conducted with separate evolutionary model settings for each partition.
To reconstruct the evolutionary relationships among upper Amazonian and Andean Bolitoglossa with all sample and geographic information, Bayesian phylogenetic analyses were run in MrBayes version 3.1.2 [ 77] under a variety of partition and model settings for each codon position separately and some combined, as calculated from Modeltest (Additional file 7).
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For Models B and C, in each gene we chose each of all possible SNP pairs in turn to be the causal SNP pair, resulting in nearly 80,000 trait model settings in total for main and validation sets.
Realistic model settings are required for accurate financial evaluation.
Since various model settings are developed for financial trading purpose in this paper, profit will be the main criterion for choosing the best model.
When we used four technical replicates, about 20% of genes expressed at relatively low levels (RPKM 3-30) did not reach their final RPKM, suggesting that these model settings were insufficient for calculating the real RPKM of genes expressed at low levels.
Starting with the modified large, medium and small predictor sets, exploratory MARS models were fit for a variety of model types, settings for the number of initial basis functions and penalties for adding new variables.
The phylogenetic tree was constructed from this alignment by the Neighbor-joining method in MEGA5 using the Jones-Taylor-Thornton substitution model and settings for uniform mutation rates and pairwise gap deletion.
Almost every burr grinder model has settings for how fine to make the coffee grounds.
The user can also specify a data set ID to view the model data and settings for that data set.
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