Your English writing platform
Discover LudwigSuggestions(2)
Exact(2)
Gene model sequences for collagen (SMED_00066_V2), troponin (SMED_00109_V2), and tropomyosin (SMED_00440_V2) are available at GEO (GPL14150, see Supplementary File GPL14150_gene_models.txt).txt
In the process of producing such a high-quality expressed gene catalog for Eucalyptus, we addressed three main questions: First, is it feasible to de novo assemble Illumina mRNA-Seq data into contiguous, near full-length gene model sequences for Eucalyptus?
Similar(58)
FDMn is the Flagged Deviation from Model sequence for gene n.
RIPCAL [ 16] was run on each repeat family alignment using the deRIP consensus as a model sequence for comparison.
Next, a representative gene model sequence for each gene cluster was selected based on best E value matches, sequence identity and coverage of nr proteins (non-redundant proteins of NCBI).
Repetitive sequences were predicted de novo and RIPCAL was used to determine genome-wide dinucleotide frequencies and to quantify RIP-like polymorphisms (SNP mutation biased towards CpA → TpA or its reverse complement TpG → TpA) within alignments of each repeat family (using the deRIP consensus as the model sequence for comparison) [ 16, 17].
Perhaps most significantly, the subfield of machine learning found wide use in biology, from modeling sequences for purposes of pattern recognition to the analysis of high-dimensional (complex) data from large-scale gene-expression studies.
Perhaps most significant, the subfield of machine learning found wide use in biology, from modeling sequences for purposes of pattern recognition to the analysis of high-dimensional (complex) data from large-scale gene-expression studies.
For this reason, model sequences have been developed for a number of organisms.
Sequences were assembled using the Staden package [ 46] together with the reference ORF model sequence and checked for differences.
Then, we propose an extended attention model for sequence-to-sequence RNNs designed to capture periods in time series with or without missing values.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com