Sentence examples for model selection program from inspiring English sources
For positive selection detection, the Fixed Effect Likelihood model (FEL) implemented in HyPhy [36], [59] was used with the HKY85+G substitution model found to be the best matrix by HyPhy's model selection program.
We have recently developed a protein model selection program called MODELGENERATOR [ 29].
The selection of the most appropriate substitution model (BLOSSUM62) was performed using the model selection program provided on the server.
The genetic model underlying the selection program requires a knowledge of heritabilities, genetics and phenotypic correlations, phenotypic variances and appropriate economic weights.
The best model of nucleotide substitution was chosen by using the Bayesian Information Criteria model selection implemented in the program jModelTest version 0.1.1 [41].
Although these measures have been used for many years in nucleotide model selection, only recently have programs such as MODELGENERATOR [ 29] and Prottest [ 30] been specifically developed to perform statistical analyses of the complete set of available amino acid substitution models.
The specific amino acid substitution matrix for each partition was selected by using the protein model selection procedure provided in the RAxML program website (http://sco.h-its.org/exelixis/resource/download/software/ProteinModelSelection.pl).org/exelixis/resource/download/software/ProteinModelSelection.pl
A model selection routine within the CAPTURE program was used to rank each of the potential models.
The most appropriate nucleotide substitution model for maximum likelihood phylogenetic analysis was determined with the model selection procedure implemented in the program Modeltest 3.7.
The program adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates [ 63].
The most widely-used program for model selection, ModelTest v.3.7 [ 17], along with DT-ModSel [ 3], were employed to select the best-fit model.
