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The input trees were calculated using PHYML 3.0 [69] with a GTR substitution model, proportion of invariable sites and among site rate parameters estimated from the data.
Protein Length in aminoacids; GC content excluding the stretch containing AARs; significant test for positive selection at any branch of the tree; species containing the AAR s); dN/ dS of the most significant evolutionary model; proportion of variance explained.
Model quality was tested by the independent sets of points (50%) set aside before GARP modeling: a chi-square test was used to compare observed success in predicting the distribution of test points with that expected under a random model (proportion of area predicted present x number of test points = expected predictive success if points and predictions were random with respect to each other).
Model proportion of variation explained was calculated using a linear model and ANOVA in R (R Core Team 2014; http://www.r-project.org/) to estimate the combined effect of QTL in the population using adjusted model R. Phenotypic correlations of SAM architecture with adult plant traits were conducted using Pearson's correlation coefficient.
Facilities that expressed an interest were purposively selected for the study to ensure the sample covered a range of characteristics, including facility location, facility funding model, proportion of high and low care residents, proportion and types of facility staff, as well as the facilities' information and communication technology capacity.
Similar(55)
GTR, general time-reversible model; HKY, the Hasegawa, Kishino, and Yano model; I, proportion of invariant sites; G, gamma distribution.
The proposed formulation allows us to model the proportion of vehicles traveling in each speed interval for the entire segment of roadway.
Under our model, the proportion of TB cases attributable to recent transmission has substantially decreased since the 1970s.
As for rat liver regeneration model, the proportion of the spot have the same change trend in the two levels is 49/124.
For each model, the proportion of explained variance was estimated.
In our model, the proportion of negative links is therefore an essential parameter in determining the degree of the correlation.
Related(19)
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