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Homology modeling of Erg8, Erg9 and HFA1 protein products was carried out using the Protein Model Portal (PMP) that provides a single interface to access 12.7 million comparative protein models across various protein structure databases (Release date: 2010/03/19) and also provides interactive services for template selection, target template alignment, model building and quality assessment [66].
Homology models for defensin PaDef peptide were created using the Protein Model Portal (http://www.proteinmodelportal.org).org
The AUROCs of the RF model, portal vein diameter, spleen width, platelet count/spleen width ratio and platelet count were all > 0.5 statistically.
Homology models were retrieved from Protein Model Portal (PMP) [ 30] repository, or were built manually by joining multiple structures into a single model of a protein.
Juergen Haas presented recent developments in the Protein Model Portal (PMP) that support model validation and quality estimation, namely with the CAMEO tool (Continuous Automated Model EvaluatiOn).
HIV-1_0.1.6 HIV-1_0.1.6 HIV-1_0.1.6with the N-terminal zinc-finger region from Protein Model Portal entry a510eadb0df840e958233f484781dde7_7 susesimposed onto the C-terminal and compositecture of PDB entry ; 1ex4.
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The PhenoMiner data are accessed through RGD's phenotypes and models portal (http://rgd.mcw.edu/phenotypes/).mcw.edu/phenotypes/
The homology models of the heavy and light chains were generated by the SWISS-MODEL workspace automated modelling portal with appropriate specification for each selected template.
All data presented in this article can be downloaded from PhenoMiner (http://www.rgd.mcw.edu/phenotypes/) in the Phenotypes & Models Portal at RGD.
As an example of the second model of portal applications, the portal team is developing a customized environment to support basic and applied studies of contaminated sediments.
As an example of the first model of portal applications, the portal team has developed resources to support and is communicating with the Head-Off EnvironmentaLouisianain Louisiana (HEAL) research project.
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