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When model populations are stratified, contacts among their respective sub-populations must be described.
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The overlap between the top 50 raking genes (by frequency of inclusion in the model populations) in the model populations was always significant (see Tables S4 and S5).
Identical model populations were treated with either OLAI or RLAI.
The top 5% of the model populations were used to generate these histograms.
In the mutation scheme, some randomly selected sites (with given probability) of the new set of the binary model population are switched.
The building model population is generated from a single design through consideration of material parameter uncertainty, with design of experiment techniques used to optimise the population size.
With w = 0.7, the model population is close to stability after 125 years, with an urban proportion of 89.5%.
At time 5, a comparison with panel B shows that the model population is still some distance from the stable population implied by the prevailing rates.
After 80 years, when the ultimate rates are in place, the model population is 78% urban as opposed to the stable figure of 90%.
Briefly, the model population was stratified according to gender, age, sexual activity level, disease state, PrEP status, and HIV-1 drug resistance.
The model population is truncated at 101 years of age.
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