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However, those techniques could be used only for model plants with known genome sequences.
With the exception of 15 sequences similar to genes belonging to the apple stem pitting virus (ASPV), all TDFs were similar to sequences from model plants, with Vitis vinifera, Ricinus communis and Populus trichocarpa being the three most represented species.
In decreasing order of priority, we used: (i) model plants with sequenced genomes (Arabidopsis, poplar and rice), (ii) functionally characterized members from non-model plants (gymnosperms, finally illustrative members from other angiosperms).
Compared with studies in model plants with known genome sequences, the lack of genomic information for tea plants has cause molecular biology research in this species to lag behind.
Using oligonucleotides, cDNA microarrays and transcriptome analysis, many comprehensive analyses of stress-induced changes in gene expression in model plants with small genomes have been undertaken, and consequently many genes associated with pathogenic stress responses in plants are known.
According to this model, plants with the S factor and two nonrestoring nuclear alleles, i.e., [S] rfrf, are male sterile (MS), whereas [S] RfRf or [S] Rfrf plants produce functional pollen (Budar et al. 2006; Chase 2007).
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Arabidopsis thaliana has been a popular model plant with biologists.
Poplar as a model plant with a completely sequenced genome has been widely applied to remediate the pollution of organic compounds [19, 20].
At the same time Arabidopsis is a model plant with high frequencies of gene duplications.
Populus trichocarpa is a model plant with whole genome sequence available [ 32].
To further demonstrate this point, we used tobacco, a model plant with very-well-established transformation protocols [ 27].
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