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Recently, transcription factors controlling the genes involved in anthocyanin biosynthesis have been characterized not only in model plants, but also in floricultural plants (e.g. petunia, snapdragon) and food crops.
This assumption is conceivable, considering not only the difference between this tree and model plants but also the strong co-evolutionary relationship of the specialist B. oleae with olive fruits.
Although future studies are needed to examine the germ line transmission and heritability of the CRISPR/Cas-induced mutations and to evaluate any potential off-target effects of the CRISPR/Cas, our results here suggest that the CRISPR/Cas technology will make targeted gene editing a routine practice not only in model plants but also in crops.
It not only provides rapid, cost-effective, and comprehensive analyses of complex nucleic acid populations for model plants or species closely related to model plants, but also provides opportunities to analyze non-model plants whose genomes have never been sequenced [ 16- 19].
The emergence of massive parallel sequencers known as next generation sequencers (NGSs) has drastically changed DNA sequencing strategy and has accelerated the collection of genome sequences not only of unicellular and model plants, but also of plants that have large and complicated genomes.
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Our studies not only identified species-specific miRNAs for the novel monocotyledonous model plant, but also provided useful information for cold-responsive miRNAs in temperate cereals and grasses.
The mechanisms controlling DNA methylation and their effects on phenotypes have been investigated in model plants [13], but their impact on the evolution of natural populations is underexplored [14], [15].
Translational genomics of these candidate genes using model plants provided encouraging results, but the field testing of transgenic crop plants for better performance and yield is still minimal.
This approach not only systematically expands the catalog of mitochondrial proteins in the model plant Arabidopsis, but also gives a systematical assessment on fourteen genomic-scale predictors for identifying mitochondria proteome.
RNA silencing pathways have been well characterized in the dicot model plant Arabidopsis but remain poorly studied in other plants like monocots to which many major crops belong.
We tried to map the remaining reads to several model plant genomes but found less than 10% mappable reads and no huge differences between these plant genomes.
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