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Since there are two fitness components encoded in the polymerases of our model organisms, namely proliferation rate and mutation rate, what we may be observing is the existence of multiple fitness equilibria between the forward and reverse polymerizing organisms.
At this point, we have acquired all required data of the model organisms, namely the set of regulators and target genes with their corresponding TFBS.
The expression pattern of CvSEP1, a class E-like MADS-box gene, reflects the expectations resulting from experiments in model organisms; namely, expression of SEP1/2-like genes was expectable for whorls II-IV, although 'expression in sepals is common but not universal' ([ 24], page 431).
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Subsequently, genome editing using CRISPR was accomplished in model organism namely Rattus norvegicus, Caenorhabditis elegans, Danio rerio, Mus musculus, Drosophila melanogaster, Arabidopsis thaliana and other organisms (12 18).
Since only 7164 out of 39,635 genes had annotations other than "hypothetical" or "putative" protein, we decided to use protein homologies with a well-studied model organism, namely Arabidopsis thaliana, to infer gene descriptions and GO classifications to each Zea mays gene.
A similar approach has been applied in model organisms, giving rise to "response eQTLs", namely loci that are associated with the response to perturbation [ 87].
This number of CNS-development-related genes is not much lower than that in model organisms known to have highly functional brains, namely, D. melanogaster (228), D. rerio (285), G. gallus (129) and M. musculus (487) [ 35].
Step 5 was to compare the HMMs against the complete protein sets from model organisms with large amounts of interaction data, namely, worm [ 63], fly [ 30] and yeast (SGD).
Irrespective of the three groups of genes that are classified based on their role during stress, it can further be grouped into two based on its applicability, namely, novel genes from the model organisms whose ecological habitat was at extremity and novel allelic variants of known genes that get modulated during stress period.
Chemosensory gene families of insects have been most extensively studied in two model organisms that both belong to the order Diptera (flies), namely Drosophila melanogaster, which feeds on yeast and sugar both as larva and adult, and Anopheles gambiae, which feeds on organic material as an aquatic larvae and on blood as an adult female or nectar as a male e.g. [ 11, 21- 23].
In this study we aimed at the genome-wide identification and annotation of genes encoding chloroplast peroxidases, namely APx, GPx and Prx, in distantly related model organisms.
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