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This was done separately for each of the 5 model organisms considered in this study.
Beyond this study, there is a substantial opportunity for future work in terms of expanding the number of model organisms considered.
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Burrow networks of the following model organisms are considered: the polychaete worms Nereis diversicolor and Schizocardium sp., the shrimp Callianassa subterranea, the echiuran worm Maxmuelleria lankesteri, the fiddler crabs Uca minax, U. pugnax and U. pugilator, and the mud crabs Sesarma reticulatum and Eurytium limosum.
In this model, organisms are considered to be "bags of genes" that evolve along a tree.
For completeness we have also obtained the non-linear model parameters for specific groups of organisms considered in Figure 44 (Additional file 1 : Table S8).
In the context of functional analyses, researchers using model organisms should consider that Hsp70 subfamilies, which constitute conserved functional units, experience complex evolutionary dynamics, often in a taxon-specific manner.
Saccharomyces cerevisiae, a eukaryotic model organism, is considered the ideal host for microbial production of plant secondary metabolites such as polyketides and alkaloids.
Organisms considered in this study.
CM genes from the other model organisms were not considered because the number of experimentally verified CM genes in these organisms is too small.
These include resemblance to other living organisms, which allows model organisms to be considered substitutes for other organisms, including human beings.
The ecology of model organisms is rarely considered, but it turns out to be crucial for understanding why only certain unicells age considerably.
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