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Model length (m).
The rigid model length scale is considered as 1 300.
The model length and width are 404 and 50 mm, respectively.
Model length and width are l, percolation media is homogeneous, and single-phase fluid is water.
The spatial and temporal damping parameters are found from trade-off curves between the data misfit and model length.
For the semi-ovoid model, length [l] and width [w] and mound height (h) were determined from direct field measurements.
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We model length-dependent ocean survival of emigrating fish by (A1) with l measured in mm, based on a fit to Shapovalov (1967) and Bond et al. (2008) as described in Satterthwaite et al. (2009).
We tuned this parameter to get model lengths reasonably close to the consensus length.
We experimented with the -gapmax option, and found that.9 gave reasonable-length models (model lengths were 338 with MUSCLE, 279 with ClustalW).
For these domain models, their model lengths were relatively short and they vary between 13 and 120 (median is 51) AA long.
Only a single family from any one clan was included and then only if the family model lengths of the HMMs in the clan differed by <2-fold.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com