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The compression that can be achieved with the model generalization method depends on the model structure and on how well the model is annotated with the ChEBI ontology (as the metabolites lacking ChEBI annotations are not generalized).
The restored hanging wall deformation in the low-angle model is annotated.
Function region extraction algorithm is given for identifying functional structures in assembly model, and functional semantics of assembly model is annotated from the aspects of assembly structure granularity and part shape granularity.
The model is annotated and visualized in the form of an extended contact map.
Each subunit model is annotated with several residue numbers for reference.
Moreover, biological data resources are often slightly lagging behind newly generated knowledge, and it is possible that a particular resource does not offer the relevant information at the time the model is annotated.
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We used the information in the reference multiple alignment to build a model of the protein family and sequences that deviated from this model were annotated as having potential sequence errors.
Genomic regions matching the first half of the MHC class I domain model were annotated as α1 domains, while features matching the second half were annotated as α2 domains.
It is imperative that the UML model be annotated with descriptions; this facilitates the subsequent semantic integration, where UML entities (classes and attributes) are matched to vocabulary concepts, and the matches require review by a subject matter expert.
Species in the model are annotated using both database-dependent (e.g. ChEBI [ 9]) and database-independent (e.g. InChI [ 10]) references, generating for the first time a representation that allows computational comparisons to be performed.
The virtual parts used to build models are annotated with additional annotations that are not normally associated with synthetic biology model annotation.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com