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The simple base model inferred a robustly supported consensus tree that matched the consensus bootstrap parsimony tree obtained previously from these data [21].
As a general strategy, we used the values of CAR in experiments A, B and C reported in Table 1 (CARA, CARB and CARC, respectively) to calibrate the model, inferred a CAR value for experiment D (CARD) and compared it with the experimental one.
Our two-area biogeographic model inferred a campanulid origin in the Southern Hemisphere.
By contrast, the RLC model inferred a small number of local clocks, with few shifts between them.
On the other hand, the site-heterogeneous CAT model inferred a different topology that received low to high PP and BP, recovering the Foraminifera + Acantharea group in an internal position, sister to Gromia (0.93 PP; 90% BP) and more closely related to Phytomyxea (0.51 PP; 50% BP) to the exclusion of Cercozoa.
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This more complex model inferred an increase in λ over 8 orders of magnitude for AAAP in Sternorrhyncha, while the rate of gene death μ decreased to 0.003 of the background rate (Table 4).
Figure 8 shows the situation that the JSR model infers a wrong result while the IJSR model obtains the right predication of the class label with a slightly smaller reconstruction error on T72 than on BMP2.
Then, the model infers a new interaction in the matrix whenever it finds three interactions satisfying this transitive closure.
With this assumption, the model infers a population structure with K number of clusters based on the genotype data.
Similar to CoGAPS, the linear model infers a strong upregulation of TGF-β from the introduction of serum.
The single-threshold GMYC model infers a single cutoff time T where all nodes above T represent species.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com