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Furthermore, Protonate 3D uses a prioritizing branch-and-bound algorithm in combination with a preceding dead-end elimination to handle the state space optimization problem and a force field based energy model including additional terms for tautomerism and ionization effects.
More information about the Archimedes model, including additional details about the equations and sources, is available elsewhere (26).
We also aimed to investigate a third model including additional clinical and biological characteristics and thus potentially allowing for more accurate prognostication.
We repeated the final model including additional separate categories for eGFR of 60 to 74, 75 to 89, and ≥90 mL/min/1.73 m, with patients with eGFRs of 75 to 89 mL/min/1.73 m as a reference group.
Multivariate analysis assessed the clinical role of TUBB3, miR-200c, HuR pattern of staining in a model including additional significant variables in univariate analysis such as (age, stage and histotype) using the Cox proportional hazards model and nonparametric testing with the Kruskal Wallis test.
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In addition to these, our model includes additional roles and responsibilities in the inspection, verification, validation and acceptance of the results of the sprints and related documentation (see Sect. 4.2.8 Inspection, verification, validation and acceptance in the new solution).
In addition to the variables listed above, the imputation model included additional predictors of missingness (see Results), and the Nelson-Aalen cumulative hazard estimator for discharge, taken from a Cox regression of LOS fitted without covariates.
The second model (extended model) includes additional variables which measure the socio-economic position of both parents.
The spoke model allows pair-wise relationships only between baits and preys in the same complexes, whereas the matrix model includes additional relationships inferred by pairing preys in the same complexes.
Each model included additional variables to assess increasingly proximate determinants of FNA.
The second model included additional confounders based on findings from previous studies [ 20, 22].
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