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A coarse grained model for proteins is developed and applied to HIV-1 protease.
A novel multicomponent adsorption equilibrium model for proteins on ion-exchange resins is developed on a statistical thermodynamic basis including surface coverage effects and protein-resin and protein protein interactions.
To determine the structure, we developed an approach that combines a biophysical model for proteins with recently obtained solid-state NMR spectroscopy data and amino acid contacts predicted from a detailed analysis of the evolutionary history of bactofilins.
We use the maximum entropy method to show first using synthetic data that a model for proteins diffusing while stochastically binding/unbinding to various affinity sites in living cells gives rise to a G t) that could otherwise be equally well fit using anomalous diffusion models.
The telomere complex is a classical model for proteins serving as adaptors between RNA and DNA [ 33, 34].
As in the BEAST analyses, we employed the WAG model for proteins and the GTR model for nucleotides.
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Bereau, T. & Deserno, M. Generic coarse-grained model for protein folding and aggregation.
Then, RaxML was applied to build phylogenetic trees under GTR+gamma for nucleotide sequences and JTT+gamma model for protein sequences.
Schlunegger, M. P., Bennett, M. J. & Eisenberg, D. Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly.
This behavior mimics that of many proteins in solution and as a result, many researchers have studied pNIPAM as a model for protein behavior.
A model for protein purification has to describe a set of behaviours that can be present during the optimisation.
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