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We next consider a more general cost model for duplication in which the cost of a duplicate operation δ x (s, t, p) is Δ1 + (t - s + 1) Δ2 (i.e., the cost is affine in the number of duplicated characters).
We used X-linked array features as a model for duplication and studied three Drosophilid species for which full genome sequence was available.
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We have presented a possible model for duplications and deletions of groups of genes that proposes that at least some duplications predate the most recent common ancestor of all Aegilops/Triticum genomes that currently exist.
The asymmetric duplication-divergence process may be a good model for gene duplication at normal times, but more factors were likely to be in play at that evolutionary stage when massive genomic duplications and explosive increase in tissues complexity happened.
Model for SPB duplication.
For this reason the Ldh gene family has been used as a model for gene duplication in vertebrate evolution [ 8, 10].
The genes encoding L-LDH have been used as a model for gene duplication due to the multiple paralogs found in eubacteria, archaebacteria, and eukaryotes.
Graemlin 2.0 (Flannick et al., 2009) formulates a model for protein duplication, deletion and mutation and aligns the network progressively using a hill-climbing algorithm.
Here we quantify this effect by using genomic content as a model for gene duplication by specifically focusing on X-linked genes, such that these genes are "duplicated" in female individuals (XX) relative to male individuals (XY).
The aim was to better understand the GR functional traits in basal ray-finned and teleost fish in order to suggest which model for gene duplication retention [ 22] best explains the preservation of two GRs in early teleosts.
We present a model for gene duplications and losses that is consistent with our data.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com