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This group prefers to model evolution as a diverse set of processes acting on the histories of diverse kinds of entities generating, finally, a diversity of overlapping and cross-cutting patterns, corresponding to different evolutionary outcomes.
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This graphs showed model configurations at equilibrium, further emphasizing the model evolutions as well as the role of serum in cell cycle.
The four lines correspond to the model evolutions as in Fig. 4. From these three comparisons, we finally adopt the case of (τSF/Gyr, τin/Gyr) = (3, 15) as the fiducial set for the Milky Way (or more precisely, for the solar neighborhood) in this paper.
PARTITIONFINDER [ 47] was used to select models of evolution as well as to examine the suitability of partitioning each dataset (mitochondrial, nuclear, and concatenated).
Our results indicate that orthologous genes manifest a great diversity of phylogenies, and this diversity implies different topologies and models of evolution, as well as an ample level of divergence.
Each data partition was allowed its own model of sequence evolution, as previously determined with MrModeltest.
For simplicity, we model evolution under purifying selection, as most housekeeping proteins which encode genes evolve under strong purifying selection [63].
Considering the indecomposable FSMC model, evolution of channel is taken as a stationary Markov process.
This is referred to as model evolution.
Under this method, we model codon evolution as a mixture of codon substitution models and use these models to assign a posterior p-value to a given conservation score.
The optimal evolutionary model was estimated as the GTR+I+Γ model of evolution, as selected by using jModelTest version 0.1 [47].
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