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In contrast, the Model Description Language (MDL) adopted by the modeling tool ProMoT is highly modular and it enables a faithful representation of biological parts and pools.
Users are thus required to learn the model description language, which may impede communication between modeling experts and experimental biologists not familiar with BNGL.
A Fault Model Description Language (FMDL) is proposed.
A metamodel is a collection of concepts and relations for describing a model using a model description language and defines syntax of a model.
After some transformations the PIM is converted to a Web-Service Description Language (WSDL) PSM, which consists of a specific model description language for web services.
ML-Space is a model description language for spatial simulation.
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Software libraries for reading and manipulating the content of these formats are also available [ 13- 15] as well as end-user programs supporting these model description languages.
Model description languages such as the Systems Biology Markup Language (SBML; Hucka et al., 2003) or CellML (Lloyd et al., 2008) allow the relationships between biological entities to be captured and the dynamics of these interactions to be described mathematically.
Users will be able to write models using a human readable language also developed within DDMoRe, the Modeling Description Language (MDL) (http://ddmore.eu/mdl).eu/mdl
In future work, we will extend the CBO to serve as the basis for a model-description language that can describe both the modeled biology and the computational methods a particular computational implementation uses to model that biology.
In the in silico modeling domain, each modeling tool, e.g. CompuCell3D (Swat et al., 2012), CHASTE (Dunn et al., 2012) and OpenAlea (Pradal et al., 2008), uses its own model-description language.
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