In Section 2, the modeling approach is described explicitly.
Since the insertions could not be described explicitly the proteochemometric model transferred their influence to the influence of the underlying mutation.
Finally, in our model ligand-receptor binding is not described explicitly at the molecular scale, but is accounted for by a membrane-particle contact potential V LR(r), where V L R (r ) = − V L R 0 if a membrane patch is within a distance R0 of the particle and zero if further away.
The mentioned fluxes are indeed not described explicitly, but are described by the model implicitly.
Hence, we have used the UFF cavity model,[ 35] which allows hydrogen atoms to be described explicitly, during each geometry optimisation procedure.
For simplicity, the effect of Mig6 was not described explicitly, but was realized by modifying four parameters in the EGFR-WT model.
The difficulty in modeling these rare events is inherently rooted in the overwhelming number of degrees of freedom described explicitly in such statistical simulations, which is conducive of entrapment in local free-energy minima.
Where RCT1 and RCT2 differ, this will be described explicitly.
The stochastic simulation model described in this paper explicitly incorporates varying probabilities of fire occurrence and severities of fire damage, according to the age and condition of the plantation.
The new model, however, includes additional terms in the perturbation equations, which describe explicitly the interaction between steady mean flow and acoustics.
