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We show results on true gene trees in Figures 4 and 5. Unsurprisingly, error rates of species trees estimated on true gene trees are lower than those estimated on estimated gene trees; while the reduction depended on the model condition, for the ASTRAL-2 datasets with 1000 genes and HGT rate (1), we see a reduction of more than 50%.
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According to this model conditions for providing medical treatment in home care are good enough when there are satisfactory grounds for relying on the DN in the medical treatment irrespective of what role the FP chooses or is forced to take.
We generated 30 datasets for each 100- and 500-taxon model condition, and 10 datasets for each 1000-taxon model condition.
For each model condition, we generated 30 replicate datasets.
We report the maximum and minimum running time for each model condition.
For each model condition, we calculated the average error rates and standard errors.
We calculated average error rates and standard error for each model condition.
We report the average topological error (ATE) for each model condition.
In the unit disk graph model, the condition for avoiding interference is the following: | x − y | ≥ D, (2).
In our model, the condition for coexistence depends explicitly on patch dynamics, which in turn modulate the limiting similarity for species coexistence.
In this "content-based model," the condition for establishing a connection is that a code, represented by a string associated with one node, match, letter for letter, a sub-string of the code associated with another node.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com