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As examples, the modularity methods of Blinov et al. require interchangeable modules to be described using either the Systems Biology Markup Language (SBML) or their proprietary markup language [ 16]; TinkerCell uses strict ontologies for model components like parts, promoters, and transcription factors, without the capability of editing or defining new ontologies [ 19].
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Like Tentoni et al [ 20], we found that the two model components overlapped almost completely, thus making the correction unnecessary.
The duct network model consists of models of components like fans and conduits and assembles them by the conservation laws.
A source model expression like "xsmekal + gauss1d + gauss1d" would result in an error due to the model component auto-naming.
The xsacisabs model is a multiplivative model component.
The xsbvapec model is an additive model component.
The xskerrdisk model is an additive model component.
The xsstep model is an additive model component.
The xsvmcflow model is an additive model component.
The xspexrav model is an additive model component.
The xsnteea model is an additive model component.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com