Such alignment was then used to scan the Pfam [41] and PDB [42] databases on October 5th, 2010 with the Hidden Markov Model based search method HHpred [39], the results of which are reported in Table S1.
Additionally, hidden Markov model based searches using a multiple alignment of known members were run using the HMMER2 package [ 36].
TBlastx and hidden Markov model based searches of all red algae genomes available failed to find this component [ 50].
To this aim, a pipeline, combining sequence clustering and Hidden Markov Model (HMM) based searches, was developed.
We applied a Hidden Markov Model (HMM) based search method [ 29] and used DBD domain sequences of known human RFX TFs to search the entire human proteome.
Identify gene-gene interactions for Alzheimer's disease applying a graphical model based module search to incorporate biological network/pathway and functional information.
[Update: This story was originally titled "Quora Confirms It's Favoring Search Ads For Eventual Monetization, Launches Author Stats Tool" because what Bodnick told me amounts to him confirming Quora if favoring an ad model based on search ads.
The Quintura affiliate program will involve site owners placing the Quintura search cloud on their site with a revenue share model based on paid search placement.
A multi-objective optimization model based on harmony search algorithm (HS) is presented.
The model was then improved by adding several new pathways, new reactions and new metabolites to the model based on database searches and literature evidence.
EAHC (Evolutionary Algorithm with Hill-Climbing search) represents the evolutionary model based on hill-climbing search but with no diversification mechanism engaged.
