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For Bayesian tree reconstructions in MrBayes, we conducted four Markov Chain Monte Carlo (MCMC) runs with a default temperature of 0.2 and the TrN + I + G model as selected as best-fit model in jModeltest 2.1 [ 72] under the Bayesian information criterion (BIC) and the Decision Theory Performance-based Selection (DT).
Figure 6 shows the AUC for each model in the stepwise selection procedure with the best model, as selected using the Akaike Information Criterion, identified.
Table 4 AIC and coefficients of discrimination (D) values of the different forms of the model fitted to the dataset using logistic regression AIC D Adaptation Belief 484.86 0.01 Adaptation Belief + Experience 482.12 0.03 Full model 196.29 0.65 The value in bold is the most parsimonious model as selected by AIC comparison (ΔAIC > 2).
Both ML and BI analyses were conducted under a GTR+I+Γ model as selected by the AIC and a single partition.
We used the GTR+I+G model as selected by MrModeltest for the combined dataset and ran analyses until 10,000 generations revealed no significant improvement of the likelihood scores of the topology.
The GTR + IG substitution model, as selected by jModelTest, and a Yule tree prior were used.
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NJ, ML and Bayesian trees were constructed with the respective best-fitting models as selected under the Akaike information criterion with MODELTEST 3.7 [53] (Table S3).
The optimal evolutionary model was estimated as the GTR+I+Γ model of evolution, as selected by using jModelTest version 0.1 [47].
For each trait, we considered models with Δ AIC c scores <2 as selected models (Burnham and Anderson 2002).
Relative standard deviation (RSD) for 8 replicate analyses of Na+ as selected model was ∼7.0%.
Bayesian analyses, using the GTRIG model of sequence evolution as selected by MrAIC [59], were implemented in MrBayes 3.1.1 [60].
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com