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The model as formulated is deliberately designed to be not too complicated so as not to place severe demands on computational resources.
The original model as formulated in [18] had four additional parameters, which we are setting to the values suggested in [18].
The duplication model as formulated by [37] is such a network model, which in an analysis by [38] is suggested to approximately follow a power-law.
This confirms the inter-species transfer of HEG containing elements, in agreement with the homing cycle model as formulated for species.
The combination of l1-regularization and non-negativity results in the l1NNLS sparse coding model as formulated below: (19) min x 1 2 b - A x 2 2 + λ T x s. t. x ≥ 0. We call Equation (19) the l1 NNLS model.
Here, generalizing the coalescent-based version of the serial founder model as formulated by DeGiorgio et al. (2009), we provide an analytical distribution of the coalescence time for a pair of lineages at a randomly selected locus, along with corresponding expected coalescence times, expected homozygosity values, and FST values.
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Selected Readings: Salmon, 1984 provides a detailed statement of the Causal Mechanical model, as originally formulated.
Nonetheless the reliance of the CM model, as originally formulated, on counterfactuals shows that it does not completely satisfy the Humean strictures described above.
The model as originally formulated by Edwards et al. included redundant columns (fluxes) in an attempt to model stoichiometrically equivalent reactions.
By contrast, the TS models is not a mixture of covarion and RAS processes; the Huelsenbeck model, as originally formulated, does not calculate covarion and RAS site likelihoods, separately.
General technique of developing mathematical models, as formulated in the paper, can be also used in other homogenization problems.
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Justyna Jupowicz-Kozak
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