Sentence examples for model and tree from inspiring English sources

Evolutionary distances were based on the Kimura 2p model and tree reconstruction on the neighbor-joining method.

The default settings for window size, a step size, replicates used, gap stripping, distance model, and tree model were, respectively, 200, 20, 100, "on", "Kimura", and "Neighbor Joining".

The molecular clock analyses give broadly similar results regardless of clock model and tree prior, with the exception of the BSP tree prior, which gives an intriguingly recent tMRCA, and faster substitution rates than the other analyses.

The learning rate (lr) is used to shrink the contribution of each tree as it is added to the model, and tree complexity (tc) determines the number of nodes in a tree and should reflect the true interaction order on the response being modeled [62].

The substitution model, clock model and tree model of the two genes were set as unlinked.

In addition to the substitution model, the clock model and tree topologies were estimated independently for each gene.

Both generalized linear model and tree-based regression were used to analyse the interaction among the learning dimensions and the effect on students' CS.

The log-likelihoods, substitution models, and tree topologies were compared among independent runs using SH tests.

The Modeltest-derived models and tree scores from maximum likelihood, Bayesian and parsimony analyses for all phylogenetic datasets appear in Table 3.

Parameters of the models and tree branches were estimated by maximum likelihood prior to the sampling.

This tree is also consistent across different substitution models and tree inference methods (NJ, ML or parsimony), all of which yielded the same tree (data not shown).