Sentence examples for model and substitution from inspiring English sources

Table 2 The best-fit nucleotide substitution model and substitution rate estimation for each partitioning schemes.

Fuel and material substitution levels are calculated based on this utilization model and substitution factors (see explanations under Approach I).

The first single search, using the best fit proportional model generated by KAKUSAN [108], was used to generate optimum substitution model and substitution rates in Treefinder [105], as well as a single tree.

The settings for the substitution model and substitution rate were the same as those used for the phylogenetic analysis.

The nucleotide substitution model and substitution rate prior for HVR were specified as described above for the demographic reconstruction, and the coalescent Bayesian skyline tree prior was used [ 79].

Sequences were simulated based on trees with collapsed branches using the same evolutionary model and substitution parameters obtained for the original dataset with the program evolver of PAML v.4.4 [ 99, 100].

In this section we provide a brief exposition of DNA substitution models and substitution rate functions used for distance estimation.

It also provides a series of methods for the developer to set up the general model, to assign parameters to substitution models and substitution models to branches.

For the size of alignments, evolutionary models, and substitution matrices used to generate each figure, see supplementary table S2, Supplementary Material online.

For BI, the GTR + I + Γ base substitution model, F81 base substitution model, and GTR+ Γ base substitution model were used with an uninformative prior for combined nuclear ribosomal ETS and ITS, chloroplast psbA-trnH, and chloroplast matK, respectively.

They were also conducted assuming Kimura's (1980) nucleotide substitution model and no variation in substitution rates among sites.