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The user submits an RNA 3D structure in PDB format (e.g. a crystal structure or a generated structural model) and specifies a target loop sequence and a target site (two or more anchors depending on loop type) for the loop to be fitted into.
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Furthermore, users can model and specify non-performance based parameters that influence resource allocation.
All the key gene/pathway targets are identified in one click after simply loading a Systems Biology Markup Language model and specifying a metabolite as the targeted product.
Optionally, they can override the workload model and specify the expected future growth percentage and any additional hours the migration infrastructure must be running (e.g., during non-working hours).
In order to handle uncertainty in kinetics and model structure, we developed the tool modelMaGe that automatically generates candidate models based on a single master model and specified modifications [8].
Data are generated assuming the correct model and specified true correlation between Y T and Y E (ψ k ).
Given the final set of fit indices, analyses rejected the fully invariant measurement model and specified a 1992 model with partial invariance in the loadings and thresholds in its place.
In describing our budding yeast cell cycle model in the NuSMV input language, we assign a single variable to each node of the model and specify the update rules of every variable.
PDE surfaces, which are defined as solutions of partial differential equations (PDEs), offer many modeling advantages in surface blending, free-form surface modeling, and specifying surface's aesthetic or functional requirements.
Graphs and term graphs have proved strikingly flexible and expressive in modeling and specifying distributed, concurrent systems.
The CAM (component and aspect model) model and the DAOP ADL language are the proposals used for modelling and specifying AO architectures.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com