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CRISPR/Cas9 is a rapidly developing genome editing technology that has been successfully applied in many organisms, including model and crop plants.
Here we review recent literature on DNA methylation variation in both model and crop plant species with a focus on the link between genotype, epigenotype, and transcription.
Over the past two decades extensive investigations have provided a wealth of information on epigenetic regulation at specific loci both in model and crop plants and the effect it may have on various aspects of plant development such as proper vegetative growth, successful reproduction and viability, effects on yield, and efficiency in coping with stress.
Recent work in both model and crop systems has uncovered many aspects of the genetic control of branching, including conservation of the MONOCULM1 and MORE AXILLARY BRANCHING/DECREASED APICAL DOMINANCE/RAMOSUS (MAX/DAD/RMS) genetic pathways among the grasses and the model dicot systems of tomato, Arabidopsis, Petunia and pea.
A variety of R genes have been cloned from model and crop plants, and many avr genes have been characterized from bacteria, fungi and oomycetes[10].
Chromosome counts suggest that between 30 and 80% of angiosperm species are polyploid, while genomic studies of selected model and crop species reveal evidence of extensive ancient genome-wide multiplications.
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The focus of this paper is therefore on developing and documenting an approach to re-assemble crop models, i.e. develop a new model from an existing one, using a crop modelling framework and crop physiological knowledge.
Especially the study for Thuringia does show how wide these results may spread, even if climate model, scenario, and crop model are kept the same.
This type of study has become increasingly popular in model plant and crop species.
Much of the data surrounding uptake of amino acids comes from model plants and crop species.
Plant miRNAs have been detected in a range of organs and tissues of model plants and crop species and often show differential expression among different tissues [ 31- 33].
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