Sentence examples for model and branch from inspiring English sources

It is assumed that PDN of MEI is a radial one, DistFlow model and Branch flow can be implemented to formulate PDN of MEI.

Both NJ and ME trees were constructed with MEGA v4.0 [35] under the Poisson correction model and branch supports were assessed with 1000 bootstrap replicates.

LG was used as evolutionary model, and branch and topology were optimized.

For the partitioned analysis, the substitution model and branch length estimates were allowed to vary independently in each partition.

We then optimized the model and branch lengths on each resulting ML tree using RAxML (-f e).

The PAML4 [ 36] package was used to perform the site model and branch model test to detected selective pressures of NBS-LRR genes among five Rosaceae species.

We should first recognize that the earliest software model was functional flow charts but many software people lost interest in this initial model and branched out in several directions.

This approach was incorporated in PAML software, which included branch model, site model, and branch-site model, allowing ω varying across branches, or sites among proteins, and both across branch and among proteins, respectively (Yang, 1997, 1998; Yang and Nielsen, 2002; Zhang et al., 2005; Yang, 2007; Yang and Nielsen, 2008; Yang and dos Reis, 2011).

We then ran codeml (branch model and branch-site options) on the alignment and a tree.

In addition, site model and branch-site model analyses of positive Darwinian selection (PDS) showed that different selection regimes could have affected the evolution of these groups.

Finally, site model and branch-site model analysis of positive selection indicated that the soybean expansin gene superfamily is under strong positive selection, and that divergent selection constraints might have influenced the evolution of the four subfamilies.