Sentence examples for model and bootstrap from inspiring English sources

Exact(9)

b) The NJ tree was constructed by Neighbor-join method with Tajima-Nei model and Bootstrap replicates set as 1000.

Phylogenetic relationship was assessed by using the neighbor-joining method based on a Tamura 3-parameter model and bootstrap analysis (1,000 replicates) as implemented in MEGA5 (8 ).

Protein maximum likelihood (ML) phylogenies were inferred using PHYML, version 2.4.4 [ 34] with the optimal substitution model, and bootstrap support values were calculated based on 500 resampled datasets.

The median (range) percent difference between the model and bootstrap median estimates was 5% (0 18), and relative standard errors of the fixed effect parameters were all <20%, indicating good precision of parameter estimates (Table 1 ).

Internal bootstrap validation, bias-corrected 95% confidence intervals for hazard ratios in the final model, and bootstrap optimism corrected c-index were calculated using 1000 re-samples (Chen and George, 1985).

Phylogenetic trees were constructed using the neighbor-joining method with genetic distances computed using the pairwise deletion model and bootstrap analysis of 500 values and root on midpoint (i.e. midpoint of the longest pathway between two clusters of sequences).

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Similar(51)

All trees presented here were built using a minimum evolution model and bootstrapped one thousand times.

Both MIN and PBC could be integrated in an analysis pipeline that makes use of standard phylogenetic techniques such as an explicit evolutionary model and bootstrapping (see above).

Neighbor-joining (NJ) trees were generated using Kimura's two-parameter model and bootstrapped using 1000 random replicates with the Phylip 3.69 software package [ 11].

Structural equation modeling and bootstrap tests of indirect effects were conducted to address the study aims.

Specifically, we compare 23 single models and bootstrap aggregating (i.e., bagging) models for their predictive abilities across five diverse medical data sets.

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