Sentence examples for model a protein from inspiring English sources

Here, we model a protein as a kinematic linkage and present a new geometric method to characterize molecular rigidity from the constraint manifold Q and its tangent space TqQ at the current configuration q.

Based on the four-step model, a protein obtains its final folded state in the membrane and, if necessary, gains its final function by association with other subunits.

In this model, a "protein" consists of two rigid spherical subunits interacting by a one-dimensional potential that is the sum of direct and indirect contributions.

Fourth, for each model, a protein interface similarity measure δ(I1, I2) is defined for two interfaces, I1 and I2 as the distance between the 106-dimensional feature vector and the separating hyperplane.

In this stochastic model, a protein is an encapsulated object that undergoes individual microscopic reactions like the binding of a metabolite to its binding site, an electron transfer from a donor group to the active site, or the release of the product molecule back into the bulk.

Briefly, in this model a protein R is expressed, phosphorylated and degraded.

In order to study the structural and conformational variability between the RF protein families, selected members of the RF superfamily were modeled using the best closed PDB templates structures using SWISS-MODEL, a protein structure homology-modeling server, via the ExPASy web server [40] [42].

TIGR03966 models a protein family that includes Rv0694, described as a flavocytochrome.

Model quality assessment programs (MQAP) that validate the accuracy of predicted structures are thus a critical aspect in the process of modeling a protein structure from its sequence.

A useful first step in modeling a protein structure is to predict the propensity for each residue to exist in and contribute to a secondary structure element.

In order to explore concrete instances of this model, I consider a simplified model of a protein sequence.